Category Archives: Resources

StarPep software & database

Overview

StarPepDB is an integrated graph database holding bioactive peptides and metadata from a large variety of biological data sources. The collected data from such heterogeneous data sources are cleaned, standardized, and merged so that it can be released into the proposed organized collection. In addition to this outcome, this graph database is embedded in the software application named starPep toolbox, which allows querying, filtering, visualizing, and analyzing the integrated data taking advantage of network-based representations.
Read More »

IMMAN Software

Overview

IMMAN (the acronym for Information theory-based CheMoMetrics ANalysis) is a multi-platform software developed in the Java programming language, designed with a remarkably user-friendly graphical interface for the computation of a collection of information-theoretic functions adapted for rank-based unsupervised and supervised feature selection tasks.
Read More »

Dover Analyzer

Overview

Dover Analyzer is a wizard like application that takes collections of databases annotated in FASTA format and guides the user through a few steps to compute the overlap, diversity and redundant or non-redundant sets of peptide sequences. It is implemented in Java to achieve platform independence and has been designed initially to analyze the publicly available antimicrobial peptide databases. However, additional analysis can be done by simply adding new databases or replacing the existing ones.
Read More »